PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BS_ECF9B4EB4.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 405aa    MW: 44991.4 Da    PI: 4.7909
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BS_ECF9B4EB4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35441342101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+++++++sws+ +nsfvv+d++ fa+ +Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g
  Traes_2BS_ECF9B4EB4.1  44 FLTKTYDMVDDPNTDSIMSWSSGNNSFVVWDPHAFATVLLPRHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 122
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +++ll++i+r+k
  Traes_2BS_ECF9B4EB4.1 123 QRHLLKNIRRRK 134
                            **********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-3940133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6140133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-3640133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.7E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDPVPSLVKE EEEEEGAHGR GDSPGARAAP RPMEGLHDAG PPPFLTKTYD MVDDPNTDSI  60
MSWSSGNNSF VVWDPHAFAT VLLPRHFKHS NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGQRHLLKNI RRRKPPAHTA SNQQSLGSYL EVGHFGYDAE IDRLKRDKQL LMAEVVKLRQ  180
EQQNMKVHLK AMEDRLRGTE QKQQQMTSFM ARILRNPEFL KQLIAKNEMS KELHDAISKK  240
RRRRIDGGPE AYAVGASSSN LEQESPVVFD SHGSVELLAE GSVPVPVELL ADGIPPDLEG  300
SVALLDDGIP PDLECSVELL VDGIPADLNG SGIDANGVTE PQDFGLGTCE AQQNRVPGLF  360
HDNFWEELLN KGLSGENDEP VNADGMDVLS EKMGYFIPNS PTLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26161331129Heat shock factor protein 1
5d5v_B2e-26161331129Heat shock factor protein 1
5d5v_D2e-26161331129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243KKRRRR
2239244KRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085450.0KF208545.1 Triticum aestivum heat shock factor A2h (HsfA2h) mRNA, complete cds.
GenBankKP2572970.0KP257297.1 Triticum aestivum HSFA2h mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228292.10.0PREDICTED: heat stress transcription factor A-2b-like
RefseqXP_010228293.10.0PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLW5BPU20.0W5BPU2_WHEAT; HSFA2h
STRINGMLOC_75519.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]